Summary of Third Set of Microarray Data Displayed on AMPL

Microarray data were produced in the AtGenExpress project of the Schmid, Lohmann and Weigel labs and the data were obtained from the TAIR website. All data were produced using the Affymetrix ATH1 Arabidopsis Genome Array. Only experiments using Columbia ecotype were selected. The y-axis of the bar graphs represents the "Signal" from Affymetrix chip. All data were normalized so that they can be compared to the NASC data. All data are presented as means of three hybridizations. Warning statements are included on the bar graphs for genes with very close homologs in Arabidopsis such that probes are not gene specific. The data follow a developmental series from left to right with samples from seedling on the left through developing seeds on the right. The following is a legend for data presented in bar graphs on the AMPL website.

cot: cotyledons

hyp: hypocotyl

rts: roots

sapx: shoot apex, vegetative + young leaves

lf1: leaves 1 + 2

sapx: shoot apex, vegetative

sdgr: seedling, green parts

sapx: shoot apex, transition (before bolting)

root: roots

lf2: rosette leaf # 2

lf4: rosette leaf #4, 1cm long

lf4: rosette leaf # 4

lf6: rosette leaf # 6

lf8: rosette leaf # 8

lf10: rosette leaf # 10

lf12: rosette leaf # 12

pet7: leaf 7, petiole

lfbs: leaf 7, proximal half

lftp: leaf 7, distal half

lsen: senescing leaves

caul: cauline leaves

stin: stem, 2nd internode

stnd: 1st node

sapx: shoot apex, inflorescence (after bolting)

fl9: flowers stage 9

fl10: flowers stage 10/11

fl12: flowers stage 12

sp12: flowers stage 12, sepals

pt12: flowers stage 12, petals

st12: flowers stage 12, stamens

cp12: flowers stage 12, carpels

fl15: flowers stage 15

pd15: flowers stage 15, pedicels

sp15: flowers stage 15, sepals

pt15: flowers stage 15, petals

sn15: flowers stage 15, stamen

cp15: flowers stage 15, carpels

poll: mature pollen

sil?: probably young siliques

sil3: siliques, w/ seeds stage 3

sil4: siliques, w/ seeds stage 4

sil5: siliques, w/ seeds stage 5

sd6: seeds, stage 6, w/o siliques

sd7: seeds, stage 7, w/o siliques

sd8: seeds, stage 8, w/o siliques

sd9: seeds, stage 9, w/o siliques

sd10: seeds, stage 10, w/o siliques